References

Papers citing BrainGlobe tools

2020

BrainGlobe Atlas API: a common interface for neuroanatomical atlases

A deep learning algorithm for 3D cell detection in whole mouse brain image datasets

A multimodal cell census and atlas of the mammalian primary motor cortex

Brainrender: a python-based software for visualizing anatomically registered data

2021

Mesoscale microscopy for micromammals: Image analysis tools for understanding the rodent brain.

Acute stress leads to the activation of multiple functional brain networks, as demonstrated in humans using functional magnetic resonance imaging (fMRI, for reviews

Brain-wide quantification of the supraspinal connectome

A deep learning algorithm for 3D cell detection in whole mouse brain image datasets

Tools for accurate post hoc determination of marker location within whole-brain microscopy images

Constructing An Adult Orofacial Premotor Atlas In Allen Mouse CCF

Visualizing anatomically registered data with brainrender

BrainGlobe reported in press/online

Why These Python Coders are Joining the napari Community

Chan Zuckerberg Science Initiative (Medium), June 2021

Using deep learning to aid 3D cell detection in whole brain microscopy images

Sainsbury Wellcome Centre Blog, June 2021

Brainrender: visualising brain data in 3D

Sainsbury Wellcome Centre Blog, March 2021

Cellfinder: Harnessing the power of deep learning to map the brain

Sainsbury Wellcome Centre Blog, April 2020

The best neuroscience stories from April 2020

NeuroWire (Scientifica), April 2020