Papers citing BrainGlobe tools


Enhanced and unified anatomical labeling for a common mouse brain atlas


BrainGlobe Atlas API: a common interface for neuroanatomical atlases

Brainrender. A python based software for visualisation of neuroanatomical and morphological data.

Brainrender: a python-based software for visualizing anatomically registered data


Visualizing anatomically registered data with brainrender

A deep learning algorithm for 3D cell detection in whole mouse brain image datasets

Tools for accurate post hoc determination of marker location within whole-brain microscopy images

Mesoscale microscopy for micromammals: image analysis tools for understanding the rodent brain

Brain-wide quantification of the supraspinal connectome

Analysis of segmentation ontology reveals the similarities and differences in connectivity onto L2/3 neurons in mouse V1

The retrosplenial cortex combines internal and external cues to encode head velocity during navigation

Constructing an adult orofacial premotor atlas in Allen mouse CCF

Visual intracortical and transthalamic pathways carry distinct information to cortical areas


Multi-Sensory Coding of Head Velocity in the Retrosplenial Cortex During Navigation

BrainGlobe reported in press/online

Why These Python Coders are Joining the napari Community

Chan Zuckerberg Science Initiative (Medium), June 2021

Using deep learning to aid 3D cell detection in whole brain microscopy images

Sainsbury Wellcome Centre Blog, June 2021

Brainrender: visualising brain data in 3D

Sainsbury Wellcome Centre Blog, March 2021

Cellfinder: Harnessing the power of deep learning to map the brain

Sainsbury Wellcome Centre Blog, April 2020

The best neuroscience stories from April 2020

NeuroWire (Scientifica), April 2020