BrainGlobe version 1 is here! Head over to the blog to find out more

Posted in 2024

imio will be merging into brainglobe-utils

The imio package will be absorbed into brainglobe-utils as a submodule, so will no longer be receiving standalone updates. This decision was made because:

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bg-space has been renamed

The “bg” prefix that a number of BrainGlobe tools carry is not very distinctive nor informative, so we are rolling out minor name changes to a lot of our packages that contain this prefix. We are also taking this opportunity to bring these tools into line with our developer guidelines for automatic deployment, tooling, and testing.

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BrainGlobe version 1 is here!

Following our series of incremental updates to a number of BrainGlobe tools, we are pleased to announce that BrainGlobe version 1 has been released today! Users can now enjoy:

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cellfinder-core and cellfinder-napari have merged

BrainGlobe version 1 is almost ready, and the next stage of its release journey is the merging of the “backend” cellfinder-core and cellfinder-napari packages into one. We had previously migrated the cellfinder data analysis workflow into the new brainglobe-workflows package, as part of our efforts to separate “backend” BrainGlobe tools from common analysis pipelines. This means that there is no longer any need to keep the “backend” package (cellfinder-core) and nor the visualisation plugin (cellfinder-napari) stored in separate, lower-level packages. As such;

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