Tutorials# Getting started# Atlas visualisation Visualise atlas data in napari 3D registration Registering a whole-brain dataset to an atlas. Track segmentation Manually segmenting a 1d track. Structure segmentation Manually segmenting a 3d structure 3D cell detection Detecting cells in 3D with cellfinder in napari Retraining cellfinder Retraining the cellfinder cell classification network in napari Specific applications# Probe segmentation Analysis of silicon probe tracks (e.g. Neuropixels) Bulk tracing analysis Analyze and visualize bulk fluorescence tracing data Cell detection via brainmapper Whole brain cell detection and registration
