Blog#
(2023-11-01) cellfinder has moved: version 1 of brainglobe-workflows released, by Will Graham
Continuing the restructuring of BrainGlobe, the
cellfinder
command-line tool has moved to a new home,brainglobe-workflows
. Please note that we will no longer be providing Docker images forcellfinder
’s command-line functionality either - if you were previously using the Docker image, please see the advice in the full changelog.(2023-11-01) Version 1 of brainreg and brainglobe-segmentation released, by Will Graham
The restructuring of BrainGlobe is underway, beginning with the release of version 1 of
brainreg
andbrainglobe-segmentation
(previously known asbrainreg-segment
). Previously, there were three tools with the prefixbrainreg
(“brain registration”) that were split across three packages:(2023-10-30) BrainGlobe is being restructured, version 1 is on it’s way!, by Will Graham
BrainGlobe provides and maintains a number of open-source tools, each of which are provided as Python-based software packages. A number of these tools also come with a graphical user-interface provided by a napari plugin that can be installed on top of the Python package. Whilst there is an advantage to the modularity provided by maintaining separate tools, the same modularity can present challenges and unnecessary difficulties when running an analysis that relies on multiple BrainGlobe tools. Particular pinch points include: