save_annotation

brainglobe_atlasapi.atlas_generation.stacks.save_annotation(stack: List[ndarray[tuple[Any, ...], dtype[_ScalarT]]], output_dir: Path, transformations: List[List[Dict]])

Save the annotation image stack.

Parameters:

• stack (List[np.ndarray]) – The annotation image stack.

• output_dir (Path) – The directory where the annotation image will be saved.

• transformations (List[List[Dict]]) – A list of transformations to be saved alongside the annotation.