brainglobe_atlasapi.atlas_generation.validate_atlases

Description

Script to validate atlases.

Functions

catch_missing_mesh_files	Check if all structures in the atlas have a corresponding mesh file.
catch_missing_structures	Check if all mesh files in the atlas folder are listed as a structure.
get_all_validation_functions	Return all individual validation functions as a list.
open_for_visual_check	Open the atlas for visual inspection (not implemented).
validate_additional_references	Check that additional references have expected properties.
validate_annotation_symmetry	Validate that equivalent regions in left and right hemispheres have the same annotation value.
validate_atlas	Validate the latest version of a given atlas.
validate_atlas_files	Check if essential files exist in the atlas folder.
validate_atlas_name	Validate the naming convention of the atlas.
validate_checksum	Validate the atlas checksum (not implemented).
validate_image_dimensions	Check that annotation and reference images have identical dimensions.
validate_mesh_matches_image_extents	Check if the mesh and the image extents are similar.
validate_metadata	Validate the atlas metadata.
validate_reference_image_pixels	Validate that the reference image was correctly rescaled.